Preprint has been published in a journal as an article
DOI of the published article http://doi.org/10.1016/j.jviromet.2020.113888
Preprint / Version 1

Ion torrent-based nasopharyngeal swab metatranscriptomics in COVID-19

##article.authors##

  • Gubio S. Campos Institute of Health Sciences, Federal University of Bahia, Salvador-BA, Brazil https://orcid.org/0000-0002-1700-2462
  • Silvia I. Sardi Institute of Health Sciences, Federal University of Bahia, Salvador-BA, Brazil https://orcid.org/0000-0002-2002-8436
  • Melissa B. Falcao Núcleo de Pesquisa e Extensão em Vigilância da Saúde, Universidade Estadual de Feira de Santana, Feira de Santana-BA, Brazil
  • Emilia M. M. A. Belitardo Institute of Health Sciences, Federal University of Bahia, Salvador-BA, Brazil https://orcid.org/0000-0003-0818-1582
  • Danilo J. P. G. Rocha Institute of Health Sciences, Federal University of Bahia, Salvador-BA, Brazil https://orcid.org/0000-0002-2160-2153
  • Carolina A. Rolo Institute of Health Sciences, Federal University of Bahia, Salvador-BA, Brazil https://orcid.org/0000-0001-8886-6340
  • Aline D. Menezes Institute of Health Sciences, Federal University of Bahia, Salvador-BA, Brazil https://orcid.org/0000-0002-1416-2874
  • Carina S. Pinheiro Institute of Health Sciences, Federal University of Bahia, Salvador-BA, Brazil https://orcid.org/0000-0001-5623-1308
  • Rejane H. Carvalho Institute of Health Sciences, Federal University of Bahia, Salvador-BA, Brazil
  • João P. P. Almeida Institute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte-MG, Brazil https://orcid.org/0000-0001-7532-8420
  • Eric R. G. R. Aguiar Department of Biological Sciences, Center of Biotechnology and Genetics, State University of Santa Cruz (UESC), Ilhéus-BA, Brazil https://orcid.org/0000-0002-8143-5756
  • Luis G. C. Pacheco Institute of Health Sciences, Federal University of Bahia, Salvador-BA, Brazil https://orcid.org/0000-0003-2500-0800

DOI:

https://doi.org/10.1590/SciELOPreprints.239

Keywords:

Covid-19, SARS-CoV-2, next-generation sequencing, metatranscriptomics

Abstract

Herein, we describe the detection of a SARS-CoV-2 genome through metatranscriptome next-generation sequencing directly from the nasopharyngeal swab of a suspected case of local transmission of Covid-19, in Brazil. Depletion of human ribosomal RNA and use of an optimized in-house developed bioinformatics strategy contributed to successful detection of the virus.

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Posted

04/29/2020

How to Cite

Campos, G., Sardi, S., Falcao, M., Belitardo, E., Rocha, D., Rolo, C., Menezes, A., Pinheiro, C., Carvalho, R., Almeida, J., Aguiar, E., & Pacheco, L. (2020). Ion torrent-based nasopharyngeal swab metatranscriptomics in COVID-19. In SciELO Preprints. https://doi.org/10.1590/SciELOPreprints.239

Section

Biological Sciences

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