Complete genomes of 568 diverse Klebsiella pneumoniae species complex isolates from humans, animals and marine sources in Norway from 2001-2020

Marit Hetland; Mia A. Winkler; Håkon Kaspersen; Fredrik Håkonsholm; Ragna-Johanne Bakksjø; Eva Bernhoff; Jose F. Delgado-Blas; Sylvain Brisse; Annapaula Correia; Aasmund Fostervold; Margaret M. C. Lam; Bjørn-Tore Lunestad; Nachiket P. Marathe; Niclas Raffelsberger; Ørjan Samuelsen; Marianne Sunde; Arnfinn Sundsfjord; Anne Margrete Urdahl; Ryan R. Wick; Kathryn E. Holt; Iren H. Löhr

doi:10.1590/SciELOPreprints.9670

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Complete genomes of 568 diverse Klebsiella pneumoniae species complex isolates from humans, animals and marine sources in Norway from 2001-2020

##article.authors##

Marit Hetland Stavanger University Hospital https://orcid.org/0000-0003-4247-8304
Mia A. Winkler Stavanger University Hospital https://orcid.org/0009-0003-4838-6838
Håkon Kaspersen Norwegian Veterinary Institute https://orcid.org/0000-0002-9559-1303
Fredrik Håkonsholm Norwegian Veterinary Institute, Ås, Norway https://orcid.org/0000-0002-6248-1810
Ragna-Johanne Bakksjø Stavanger University Hospital https://orcid.org/0000-0002-2921-7866
Eva Bernhoff Stavanger University Hospital https://orcid.org/0000-0001-6715-757X
Jose F. Delgado-Blas Université Paris Cité https://orcid.org/0000-0001-6447-7113
Sylvain Brisse Université Paris Cité https://orcid.org/0000-0002-2516-2108
Annapaula Correia London School of Hygiene & Tropical Medicine
Aasmund Fostervold Stavanger University Hospital
Margaret M. C. Lam Monash University https://orcid.org/0000-0001-9590-6849
Bjørn-Tore Lunestad University of Bergen https://orcid.org/0000-0002-9139-8346
Nachiket P. Marathe Institute of Marine Research https://orcid.org/0000-0003-2955-3402
Niclas Raffelsberger UiT The Arctic University of Norway
Ørjan Samuelsen University Hospital of North Norway https://orcid.org/0000-0002-5525-2614
Marianne Sunde Norwegian Veterinary Institute https://orcid.org/0000-0002-2326-4338
Arnfinn Sundsfjord UiT The Arctic University of Norway
Anne Margrete Urdahl Norwegian Veterinary Institute https://orcid.org/0000-0002-6149-2825
Ryan R. Wick University of Melbourne https://orcid.org/0000-0001-8349-0778
Kathryn E. Holt London School of Hygiene & Tropical Medicine https://orcid.org/0000-0003-3949-2471
Iren H. Löhr Stavanger University Hospital https://orcid.org/0000-0002-8847-0044

DOI:

https://doi.org/10.1590/SciELOPreprints.9670

Keywords:

Klebsiella pneumoniae, Hybrid assembly, ONT, Illumina, One Health

Resumo

We report 579 hybrid genome assemblies (568 complete) of Klebsiella pneumoniae species complex isolates from human, animal and marine sources in Norway collected 2001-2020, belonging to six phylogroups including K. pneumoniae (n=493) and K. variicola (n=69) and 364 unique sequence types.

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Postado

05/09/2024

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Hetland, M., Winkler, M. A., Kaspersen, H., Håkonsholm, F., Bakksjø, R.-J., Bernhoff, E., Delgado-Blas, J. F., Brisse, S., Correia, A., Fostervold, A., Lam, M. M. C., Lunestad, B.-T., Marathe, N. P., Raffelsberger, N., Samuelsen, Ørjan, Sunde, M., Sundsfjord, A., Urdahl, A. M., Wick, R. R., Holt, K. E., & Löhr, I. H. (2024). Complete genomes of 568 diverse Klebsiella pneumoniae species complex isolates from humans, animals and marine sources in Norway from 2001-2020. In SciELO Preprints. https://doi.org/10.1590/SciELOPreprints.9670

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Ciências Biológicas

Copyright (c) 2024 Marit Hetland, Mia A. Winkler, Håkon Kaspersen, Fredrik Håkonsholm, Ragna-Johanne Bakksjø, Eva Bernhoff, Jose F. Delgado-Blas, Sylvain Brisse, Annapaula Correia, Aasmund Fostervold, Margaret M. C. Lam, Bjørn-Tore Lunestad, Nachiket P. Marathe, Niclas Raffelsberger, Ørjan Samuelsen, Marianne Sunde, Arnfinn Sundsfjord, Anne Margrete Urdahl, Ryan R. Wick, Kathryn E. Holt, Iren H. Löhr

Este trabalho está licenciado sob uma licença Creative Commons Attribution 4.0 International License.

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Dados de financiamento

Helse Vest Regionalt Helseføretak
Números do Financiamento F-12508
Trond Mohn stiftelse
Números do Financiamento TMF2019TMT03

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